Community-based natural resource governance is often promoted in the name of sustainability, yet long-term outcomes remain elusive. This study examines the impact of various types of trust as the underpinning factor for the long-term resilience of collaborative resource governance. Using a four-type trust framework, dispositional, affinitive, rational, and procedural, the study compares trust trajectories across the prior to-, during-, and post-project phases of matsutake mushroom management in two communities within the S National Protected Area, Yunnan Province, China. Drawing on qualitative interviews and comparative case analysis, the study finds that while neither community sustained co-management mechanisms in full, X Village retained partial continuity through embedded procedural and rational trust. In contrast, Y village experienced accelerated institutional decline after project withdrawal, as market changes and weak enforcement undermined collective norms and trust in formal structures. These findings underscore that institutional resilience is shaped not only by institutional design but also by the evolution and interaction of trust types over time. By tracing trust trajectories across project stages, this study contributes a micro-level explanation of how trust mediates post-project governance outcomes. It emphasizes the importance of layering trust and embedding it within local social and institutional practices. The findings highlight the need to consider how co-management strategies can support trust continuity after project withdrawal, particularly by acknowledging the underlying structural conditions that shape trust resilience.